Precompiled codon-usage tables

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More Codon Usage Bias

χ measure. In statistics, the χ statstic computes how different the distribution of values is from a uniform distribution. Let d = c1 . . . cN be a DNA string in nucleotide alphabet, and let L be the total number of codons in d that are not Methinine or Tryptophan (the number does include the stop codons though). Let a be a k-degenerate amino acid, and let La be the total number of codons codin...

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Codon usage and gene expression.

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Synonymous codon usage in bacteria.

In most bacteria, synonymous codons are not used with equal frequencies. Different factors have been proposed to contribute to codon usage preference, including translational selection, GC composition, strand-specific mutational bias, amino acid conservation, protein hydropathy, transcriptional selection and even RNA stability. The review discusses these factors and their contribution to bias i...

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Codon usage in Pseudomonas aeruginosa.

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GCUA: general codon usage analysis

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ژورنال

عنوان ژورنال: Genome Biology

سال: 2000

ISSN: 1474-760X

DOI: 10.1186/gb-2000-1-1-reports241